1. Chi, W. C., Pang, K. L., Chen, W. L., Wang, G. J., and Lee, T. H.. Antimicrobial and iNOS inhibitory activities of the endophytic fungi isolated from the mangrove plant Acanthus ilicifolius var. xiamenensis. Botanical Studies, 60(4), 1-8.
2. Chi, W. C., Chen, W. L., He, C. C., Guo, S.Y., Cha, H. J., Tsang, L. M., Ho, T. W., and Pang, K. L.. A highly diverse fungal community associated with leaves of the mangrove plant Acanthus ilicifolius var. xiamenensis revealed by isolation and metabarcoding analyses. PeerJ, 7, e7293.
3. Yao, J. W., Chi, W. C., Xu, J. H., Lee, G. H., Chiang, M. Y., Peng, B. R., Lin, N. C., Hu, C. C., Fang, L. S., Li, G. Q., Chang, Y. C., Hwang, T. L., Sung,P. J.. New hydroperoxybriarane diterpenoids from the octocoral Briareum violaceum. Tetrahedron, 75, 1510-1516.
4. Yao, J. W., Chi, W. C., Lee, G. H., Su, J. H., Hwang, T. L., Wu, Y. J., Su, T. R., Sheu, J. H., Sung, P. J.. 2-Acetoxybriaranes from Briareum violaceum. Tetrahedron, 75, 3751-3757.
5. David Overy, Hebelin Correa, Catherine Roullier, Wei-Chiung Chi_, Ka-Lai Pang  , Mostafa Rateb, Rainer Ebel, Zhuo Shang, Rob Capon, Gerald Bills and Russell Kerr  . Does Osmotic Stress Affect Natural Product Expression in Fungi?. Marine drugs, 15(254)..
6. George Hsiao, Wei-Chiung Chi, Ka-Lai Pang, Jih-Jung Chen, Yueh-Hsiung Kuo, Yu-Kai Wang, Hyo-Jung Cha, Shen-Chieh Chou, and Tzong-Huei Lee.  Hirsutane-type Sesquiterpenes with Inhibitory Activity of Microglial Nitric Oxide Production from a Red Alga-associated Chondrostereum sp. NTOU4196. Journal of Natural Products , 80,1615-1622.
7. Wei-Chiung Chi, Chih-Hung Chen, and Shiu-Mei Liu*. Biodegradation of anthraquinone dyes by Shewanella sp. NTOU1 under anaerobic conditions. Water Sci Technol, 60(4):889-99..
8. Shiu-Mei Liu , Yue-Lu Lin and Wei-chiung Chi. The effects of benzoate, cyclohes-1-ene carboxylate, and cyclohexane carboxylate on biotransformation of o-phthalate in sediment slurries under sulfate-reducing conditions. Chemosphere, (59) 41-48. 
9. Shiu-Mei Liu and Wei-chiung Chi. CO₂-H₂-dependent anaerobic biotransformation of phthalic acid isomers in sediment slurries. Chemosphere, (52)951-958.
10. Shiu-Mei Liu* and Wei-chiung Chi.. Effects of the headspace gas composition on anaerobic biotransformation of o-, m-, and p-toluic acid in sedimentslurries. Journal of Environment Science and Health part A, 38(6) 1099-1113.
11. Cham-En Kuo, Wei-chiung Chi, and Shiu-Mei Liu * Biotransformation of p-toluic acid in anoxic estuarine sediments under a CO₂ or N₂/H₂ atmospher. Chemosphere, (45)835-842. 

1. 季偉瓊。微生物概論(Concepts in microbiology) -常見食品病源菌之檢驗與預防-(Prevention and Inspection of Foodborne) -（ISBN：978-986-5789-13-8）（第二版）。台北：蘭臺出版社。
2. 季偉瓊。基礎環境微生物學（ISBN：978-986-5789-12-1）（第二版）。台北：博客思出版社。
3. 季偉瓊。基礎環境微生物學（ISBN：978-986-6589-14-0）（第一版）。台灣：博客思出版社。
4. 季偉瓊。微生物概論(Concepts in microbiology) -常見食品病源菌之檢驗與預防-(Prevention and Inspection of Foodborne)。（ISBN：986-7626-24-9）（第一版）。台灣台北：蘭臺出版社。

1. Wei-Chiung Chi, Ka-Lai Pang, Wei-Ling Chen, Guei-Jane Wang and Tzong-Huei Leef, Bioactive Potential of Culturable Fungi isolated from the Endemic Plant Acanthus Xiamenensis.第三十四屆天然藥物研討會.
2. Wei‑Chiung Chi, Chia-Hao Chang, Ching-An Kuo,Yuen-Sing Lee, Tzong‑Huei Lee, Antimicrobial Activities of the Endophytic Fungi Isolated from the Medicinal Plant Atriplex Maximowicziana Makino at Kinmen.第三十四屆天然藥物研討會.
3. Wei-Chiung Chi, Wei-Ling, Chen, Tzong-Huei Lee and Ka-Lai Pang. . Isolation and identification of an antifungal compound from endophytic fungus Alternaria brassicicola associated with Acanthus ilicifolius at kinmen. 15th International Marine and Freshwater Mycology Symposium.廈門..
4. Wei-chioung,Chi, Guei-Jane, Wang, Wei-ling Chen, Tzong-Huei,Lee and Ka-Lai ,Pang. Anti-fungal and anti-bacterial activities of ethyl acetate extracts of endophytic fungi isolated from Acanthus xiamenensis (kinmen). 廈門.
5. Wei-Chiung Chi, Wei-Ling, Chen, Tzong-Huei Lee and Ka-Lai Pang . Anti-fungal and anti-bacterial activities of ethyl acetate extracts of endophytic fungi isolated from Acanthus xiamenensis (kinmen). 台灣微生物學會第二十二屆學術研討會..
6. Wei-Chiung Chi, Chih-Yu Yeh, Ching-Yi Tsai, Iang-Wei Li, and Chang-Ping Yu. Enhanced decolorization and degradation of textile Dye by using Citrobacter sp. Strain E1 . 台灣微生物學會第二十一屆學術研討會,
7. Wei-Chiung Chi, Wei-Ling, Chen, Tzong-Huei Lee and Ka-Lai Pang . Chemical constituents of the fermented broth of the endophytic fungus Alternaria brassicicola NTOU 4368 associated with Acanthus ilicifolius. 1st International conference on Marine Fungal Natural Products, 法國..
8. Wei-Chiung Chi, Chih-Yu Yeh, Ching-Yi Tsai, Iang-Wei Li, and Chang-Ping Yu. Optimization of culture condition for enhanced decolorization and degradation of textile Dye by using Bacillus strain B2 . 第十七次全國環境微生物學學術研討會, 中國四川.
9. Wei-chioung,Chi，Weiling Chen ，Guei-Jane, Wang，Tzong-Huei,Lee and Ka-Lai ,Pang. Secondaryary metabolites of fungal endophytes Acanthus xiamenensis, Kinmen. 前瞻微生物生態學研討會: 使用傳統和分子技術詮釋個體和環境生物學, 台灣台北中央研究院.
10. Wei-Chiung Chi, Chien-Peng Hu, Chih-Hung Chen, Shiu-Mei Liu. . Biodegradation products of aromatic amines by Shewanella decolorationis NTOU1 under aerobic conditions. 2nd Annual Conference of International Medical Geology Association, 成功大學.
11. 季偉瓊,劉秀美 . Study of the aerobic treatment of aromatic amines by Shewanella sp.NTOU1 . 微生物學會, 國立成功大學.
12. Wei-chiung, Chi ,Shiu-Mei Liu,. Biodegradation and toxicity of aromatic amines by Shewanella sp.NTOU1 under aerobic system,. 台灣微生物生態學會, 國立中央大學. 

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